Variant report

Variant	rs17536968
Chromosome Location	chr18:25753257-25753258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11661487	0.83[AFR][1000 genomes]
rs11874478	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs11874635	0.83[AMR][1000 genomes]
rs17495279	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1944288	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs2191636	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs6508526	0.85[YRI][hapmap]
rs6508527	0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6508528	0.85[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
3	chr18:25738800-25754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:25742600-25754200	Weak transcription	Brain Angular Gyrus	brain
5	chr18:25742800-25755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:25744800-25754200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:25745000-25753800	Weak transcription	HSMM	muscle
8	chr18:25747200-25753600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr18:25747600-25753800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr18:25749000-25754000	Enhancers	HepG2	liver
11	chr18:25749200-25753400	Weak transcription	Osteobl	bone
12	chr18:25749800-25759200	Active TSS	Right Ventricle	heart
13	chr18:25750200-25754000	Weak transcription	Fetal Kidney	kidney
14	chr18:25751600-25753400	Enhancers	Fetal Brain Male	brain
15	chr18:25752000-25754000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr18:25752000-25754000	Weak transcription	Brain Anterior Caudate	brain
17	chr18:25752000-25754200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr18:25752000-25754200	Active TSS	Fetal Brain Female	brain
19	chr18:25752000-25754600	Weak transcription	Brain Hippocampus Middle	brain
20	chr18:25752200-25753400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr18:25752200-25754200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:25752200-25754200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr18:25752200-25754200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr18:25752200-25754200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr18:25752200-25754200	Weak transcription	Left Ventricle	heart
26	chr18:25752200-25755200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr18:25752400-25759600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr18:25752600-25753800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:25752600-25755200	Flanking Active TSS	Liver	Liver
30	chr18:25752600-25759200	Active TSS	Right Atrium	heart
31	chr18:25752800-25753400	Enhancers	A549	lung
32	chr18:25752800-25753600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr18:25752800-25756600	Active TSS	Fetal Heart	heart
34	chr18:25753000-25753600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr18:25753000-25753600	Flanking Active TSS	NH-A	brain
36	chr18:25753000-25755400	Active TSS	Brain Germinal Matrix	brain
37	chr18:25753200-25753600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
38	chr18:25753200-25753600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr18:25753200-25753800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr18:25753200-25756200	Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr18:25753200-25758600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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