Variant report

Variant	rs6508528
Chromosome Location	chr18:25732861-25732862
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11874478	0.85[LWK][hapmap];0.84[MKK][hapmap]
rs11874635	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17495279	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs17536968	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs1944288	0.85[LWK][hapmap];0.84[MKK][hapmap]
rs641876	1.00[CHD][hapmap]
rs6508526	0.89[LWK][hapmap];0.86[MKK][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs6508527	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs660656	1.00[CHD][hapmap]
rs7232172	1.00[CHD][hapmap];0.83[GIH][hapmap]
rs8088570	1.00[CHD][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25726000-25739200	Weak transcription	HSMM	muscle
3	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:25728000-25737400	Weak transcription	Fetal Lung	lung
5	chr18:25728200-25739200	Weak transcription	HepG2	liver
6	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
7	chr18:25729200-25737800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:25729200-25739000	Weak transcription	A549	lung
9	chr18:25730000-25733000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:25730000-25735000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr18:25730000-25738000	Weak transcription	Fetal Stomach	stomach
12	chr18:25730200-25738000	Weak transcription	Aorta	Aorta
13	chr18:25730400-25736200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr18:25730400-25736400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr18:25730600-25736200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr18:25730800-25738800	Enhancers	Brain Substantia Nigra	brain
17	chr18:25731000-25733000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr18:25731000-25734600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:25731000-25734800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr18:25731000-25734800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr18:25731000-25736000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr18:25731000-25736000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr18:25731000-25738000	Enhancers	Brain Angular Gyrus	brain
24	chr18:25731000-25738000	Enhancers	Brain Anterior Caudate	brain
25	chr18:25731200-25733400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr18:25731400-25733000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr18:25731400-25733800	Enhancers	NH-A	brain
28	chr18:25731600-25734000	Enhancers	Fetal Brain Female	brain
29	chr18:25731600-25734200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr18:25731600-25736800	Weak transcription	Liver	Liver
31	chr18:25731800-25733600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:25731800-25740600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr18:25732000-25733600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr18:25732200-25733000	Enhancers	H9 Cell Line	embryonic stem cell
35	chr18:25732200-25733000	Flanking Active TSS	Brain Cingulate Gyrus	brain
36	chr18:25732200-25733600	Enhancers	Fetal Brain Male	brain
37	chr18:25732200-25734000	Enhancers	Right Atrium	heart
38	chr18:25732400-25733200	Enhancers	Right Ventricle	heart
39	chr18:25732400-25733400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr18:25732400-25733600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr18:25732400-25734400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr18:25732400-25735200	Enhancers	Left Ventricle	heart
43	chr18:25732400-25735600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr18:25732400-25736000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr18:25732600-25733000	Flanking Active TSS	Fetal Heart	heart
46	chr18:25732600-25733200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr18:25732600-25733800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr18:25732600-25734000	Enhancers	Fetal Kidney	kidney
49	chr18:25732600-25736800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr18:25732800-25733000	Enhancers	Gastric	stomach

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