Variant report

Variant	rs7232172
Chromosome Location	chr18:25729705-25729706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11872166	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17495264	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17495321	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs17495341	0.85[AMR][1000 genomes]
rs17495417	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17536834	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17536898	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17536982	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs641876	1.00[CHD][hapmap]
rs6508528	1.00[CHD][hapmap];0.83[GIH][hapmap]
rs660656	1.00[CHD][hapmap]
rs7233210	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7242128	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs73402070	1.00[AMR][1000 genomes]
rs8084198	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs8084488	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs8088570	0.85[ASW][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs8092856	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs8097331	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25703800-25730000	Weak transcription	Aorta	Aorta
2	chr18:25710600-25731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr18:25712600-25730000	Weak transcription	Left Ventricle	heart
4	chr18:25716800-25730400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:25717600-25753400	Weak transcription	Dnd41	blood
6	chr18:25720800-25730000	Weak transcription	Fetal Kidney	kidney
7	chr18:25721400-25730000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr18:25724000-25732400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:25724000-25732800	Weak transcription	Gastric	stomach
10	chr18:25725000-25729800	Enhancers	Fetal Heart	heart
11	chr18:25725000-25731600	Enhancers	Liver	Liver
12	chr18:25725600-25731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr18:25726000-25739200	Weak transcription	HSMM	muscle
14	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr18:25726800-25731000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr18:25727000-25730000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr18:25727000-25731000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr18:25727200-25731000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr18:25727800-25729800	Weak transcription	Brain Germinal Matrix	brain
20	chr18:25727800-25732200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr18:25728000-25731000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr18:25728000-25731400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr18:25728000-25737400	Weak transcription	Fetal Lung	lung
24	chr18:25728200-25732200	Weak transcription	Fetal Brain Male	brain
25	chr18:25728200-25732400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr18:25728200-25739200	Weak transcription	HepG2	liver
27	chr18:25728400-25732000	Enhancers	Right Ventricle	heart
28	chr18:25728600-25730000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr18:25728600-25730200	Weak transcription	Right Atrium	heart
30	chr18:25728600-25730800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr18:25728600-25731000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:25728600-25731000	Weak transcription	Brain Hippocampus Middle	brain
33	chr18:25728600-25731000	Weak transcription	Ovary	ovary
34	chr18:25728800-25729800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr18:25728800-25730000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr18:25728800-25730000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr18:25728800-25730200	Weak transcription	Brain Substantia Nigra	brain
38	chr18:25728800-25730400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr18:25728800-25731000	Weak transcription	Brain Angular Gyrus	brain
40	chr18:25728800-25731000	Weak transcription	Brain Anterior Caudate	brain
41	chr18:25728800-25731000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr18:25728800-25731400	Weak transcription	NH-A	brain
43	chr18:25728800-25732800	Weak transcription	Osteobl	bone
44	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
45	chr18:25729200-25730200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr18:25729200-25730400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr18:25729200-25731000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr18:25729200-25731600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr18:25729200-25731600	Weak transcription	Fetal Brain Female	brain
50	chr18:25729200-25732000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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