Variant report

Variant	rs17495321
Chromosome Location	chr18:25746807-25746808
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11872166	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495264	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495341	0.85[AMR][1000 genomes]
rs17495417	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536834	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536898	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536982	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7232172	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs7233210	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7242128	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084198	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084488	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8088570	0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092856	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8097331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
3	chr18:25734600-25748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25734800-25749200	Weak transcription	Fetal Kidney	kidney
5	chr18:25736800-25747400	Enhancers	Liver	Liver
6	chr18:25738800-25754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr18:25739200-25747200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr18:25739400-25751800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr18:25741200-25753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr18:25742400-25747200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr18:25742400-25751800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:25742600-25751800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:25742600-25754200	Weak transcription	Brain Angular Gyrus	brain
14	chr18:25742800-25747200	Enhancers	Fetal Heart	heart
15	chr18:25742800-25749800	Weak transcription	Right Ventricle	heart
16	chr18:25742800-25755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr18:25743000-25751600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr18:25743400-25747200	Weak transcription	Fetal Intestine Large	intestine
19	chr18:25743400-25747200	Weak transcription	Fetal Intestine Small	intestine
20	chr18:25743400-25747600	Weak transcription	Brain Anterior Caudate	brain
21	chr18:25743400-25747800	Weak transcription	A549	lung
22	chr18:25743400-25753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr18:25743600-25747600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr18:25743600-25747800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr18:25743600-25747800	Weak transcription	Right Atrium	heart
26	chr18:25743600-25750400	Weak transcription	Left Ventricle	heart
27	chr18:25743800-25747200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr18:25743800-25747400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr18:25743800-25747800	Weak transcription	Osteobl	bone
30	chr18:25744600-25747600	Enhancers	HepG2	liver
31	chr18:25744800-25748000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr18:25744800-25749000	Strong transcription	NH-A	brain
33	chr18:25744800-25754200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr18:25745000-25753800	Weak transcription	HSMM	muscle
35	chr18:25745200-25749200	Weak transcription	Fetal Brain Female	brain
36	chr18:25745800-25747000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr18:25746200-25751400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr18:25746600-25747200	Enhancers	Brain Germinal Matrix	brain
39	chr18:25746600-25747400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr18:25746600-25747600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr18:25746600-25752000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr18:25746800-25747200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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