Variant report

Variant	rs17536982
Chromosome Location	chr18:25755075-25755076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11872166	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495264	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495321	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495341	0.85[AMR][1000 genomes]
rs17495417	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536834	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536898	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7232172	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7233210	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7242128	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084198	0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084488	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8088570	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092856	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8097331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25749800-25759200	Active TSS	Right Ventricle	heart
2	chr18:25752200-25755200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:25752400-25759600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr18:25752600-25755200	Flanking Active TSS	Liver	Liver
5	chr18:25752600-25759200	Active TSS	Right Atrium	heart
6	chr18:25752800-25756600	Active TSS	Fetal Heart	heart
7	chr18:25753000-25755400	Active TSS	Brain Germinal Matrix	brain
8	chr18:25753200-25756200	Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr18:25753200-25758600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr18:25753400-25759600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr18:25753600-25758800	Active TSS	NH-A	brain
12	chr18:25753600-25759200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr18:25753800-25758800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:25754000-25758800	Active TSS	Fetal Kidney	kidney
15	chr18:25754000-25759200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr18:25754200-25755200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
17	chr18:25754200-25755800	Active TSS	Left Ventricle	heart
18	chr18:25754200-25756600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr18:25754200-25758600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:25754200-25758800	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr18:25754200-25759000	Active TSS	Brain Angular Gyrus	brain
22	chr18:25754200-25759000	Active TSS	Brain Cingulate Gyrus	brain
23	chr18:25754200-25759600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr18:25754400-25755400	Flanking Active TSS	HSMM	muscle
25	chr18:25754400-25755400	Flanking Active TSS	Osteobl	bone
26	chr18:25754400-25759200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr18:25754400-25759200	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr18:25754600-25755200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
29	chr18:25754600-25755200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr18:25754600-25755800	Active TSS	Fetal Brain Female	brain
31	chr18:25754600-25756200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:25754600-25756600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr18:25754600-25758600	Active TSS	Brain Hippocampus Middle	brain
34	chr18:25754600-25758600	Active TSS	HSMMtube	muscle
35	chr18:25754600-25758800	Active TSS	Brain Substantia Nigra	brain
36	chr18:25754600-25759400	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr18:25754800-25755200	Flanking Active TSS	A549	lung
38	chr18:25754800-25756400	Bivalent/Poised TSS	HepG2	liver
39	chr18:25754800-25756600	Flanking Active TSS	HUVEC	blood vessel
40	chr18:25754800-25759000	Active TSS	Brain Anterior Caudate	brain
41	chr18:25755000-25755200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
42	chr18:25755000-25755200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr18:25755000-25755200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr18:25755000-25755200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
45	chr18:25755000-25755200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
46	chr18:25755000-25755200	Active TSS	Fetal Stomach	stomach
47	chr18:25755000-25755600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr18:25755000-25755600	Active TSS	Ovary	ovary
49	chr18:25755000-25755800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr18:25755000-25756000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links