Variant report

Variant	rs8084488
Chromosome Location	chr18:25738613-25738614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11872166	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495264	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495321	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495341	0.85[AMR][1000 genomes]
rs17495417	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536834	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536898	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536982	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7232172	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7233210	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7242128	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402070	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084198	0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8088570	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092856	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8097331	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25726000-25739200	Weak transcription	HSMM	muscle
3	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:25728200-25739200	Weak transcription	HepG2	liver
5	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
6	chr18:25729200-25739000	Weak transcription	A549	lung
7	chr18:25730800-25738800	Enhancers	Brain Substantia Nigra	brain
8	chr18:25731800-25740600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr18:25733000-25741600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:25733600-25743400	Weak transcription	Fetal Brain Male	brain
11	chr18:25733800-25740200	Weak transcription	NH-A	brain
12	chr18:25734000-25743200	Weak transcription	Fetal Brain Female	brain
13	chr18:25734400-25742200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr18:25734600-25739200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr18:25734600-25748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:25734800-25749200	Weak transcription	Fetal Kidney	kidney
17	chr18:25735600-25741800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr18:25736000-25740600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr18:25736000-25740600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr18:25736000-25740600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr18:25736000-25742200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr18:25736200-25739000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr18:25736200-25739200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr18:25736200-25740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr18:25736600-25740200	Weak transcription	Right Ventricle	heart
26	chr18:25736800-25747400	Enhancers	Liver	Liver
27	chr18:25737200-25743600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr18:25737400-25738800	Enhancers	Fetal Lung	lung
29	chr18:25737800-25738800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr18:25737800-25738800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr18:25738000-25738800	Enhancers	Fetal Stomach	stomach
32	chr18:25738000-25739400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr18:25738000-25739600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr18:25738000-25740600	Enhancers	Ovary	ovary
35	chr18:25738000-25741000	Enhancers	Brain Germinal Matrix	brain
36	chr18:25738200-25739200	Enhancers	Osteobl	bone
37	chr18:25738200-25739400	Enhancers	Fetal Intestine Small	intestine
38	chr18:25738200-25739600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr18:25738200-25739600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr18:25738200-25739600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr18:25738200-25740800	Enhancers	Left Ventricle	heart
42	chr18:25738200-25741200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr18:25738200-25742800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr18:25738400-25738800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr18:25738400-25738800	Enhancers	Brain Angular Gyrus	brain
46	chr18:25738400-25739200	Enhancers	Brain Cingulate Gyrus	brain
47	chr18:25738400-25739400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr18:25738400-25739800	Enhancers	Fetal Intestine Large	intestine
49	chr18:25738400-25740800	Enhancers	Fetal Heart	heart
50	chr18:25738400-25741200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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