Variant report

Variant	rs17536898
Chromosome Location	chr18:25747602-25747603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11872166	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495264	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495321	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495341	0.85[AMR][1000 genomes]
rs17495417	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536834	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536982	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7232172	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7233210	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7242128	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084198	0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084488	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8088570	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092856	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8097331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
3	chr18:25734600-25748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25734800-25749200	Weak transcription	Fetal Kidney	kidney
5	chr18:25738800-25754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:25739400-25751800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr18:25741200-25753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr18:25742400-25751800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:25742600-25751800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr18:25742600-25754200	Weak transcription	Brain Angular Gyrus	brain
11	chr18:25742800-25749800	Weak transcription	Right Ventricle	heart
12	chr18:25742800-25755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:25743000-25751600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr18:25743400-25747800	Weak transcription	A549	lung
15	chr18:25743400-25753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr18:25743600-25747800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr18:25743600-25747800	Weak transcription	Right Atrium	heart
18	chr18:25743600-25750400	Weak transcription	Left Ventricle	heart
19	chr18:25743800-25747800	Weak transcription	Osteobl	bone
20	chr18:25744800-25748000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr18:25744800-25749000	Strong transcription	NH-A	brain
22	chr18:25744800-25754200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr18:25745000-25753800	Weak transcription	HSMM	muscle
24	chr18:25745200-25749200	Weak transcription	Fetal Brain Female	brain
25	chr18:25746200-25751400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr18:25746600-25752000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr18:25747200-25747800	Enhancers	Fetal Intestine Small	intestine
28	chr18:25747200-25748000	Enhancers	Fetal Intestine Large	intestine
29	chr18:25747200-25748800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr18:25747200-25749000	Weak transcription	Brain Germinal Matrix	brain
31	chr18:25747200-25753600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr18:25747400-25747800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr18:25747400-25747800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr18:25747400-25748000	Flanking Active TSS	Liver	Liver
35	chr18:25747400-25748600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr18:25747400-25749400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr18:25747400-25751600	Enhancers	Fetal Heart	heart
38	chr18:25747400-25751800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr18:25747600-25747800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr18:25747600-25747800	Flanking Active TSS	HepG2	liver
41	chr18:25747600-25748400	Enhancers	Brain Anterior Caudate	brain
42	chr18:25747600-25753800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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