Variant report

Variant	rs641876
Chromosome Location	chr18:25629250-25629251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr18:25629201-25629400	HepG2	liver:	n/a	n/a
2	MAFK	chr18:25629162-25629397	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
CDH2	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs612783	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs642680	0.82[YRI][hapmap]
rs6508528	1.00[CHD][hapmap]
rs655461	0.82[YRI][hapmap]
rs660656	1.00[CHD][hapmap];0.87[GIH][hapmap];0.82[YRI][hapmap]
rs671798	0.82[YRI][hapmap]
rs7232172	1.00[CHD][hapmap]
rs8088570	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25618400-25631600	Weak transcription	Fetal Brain Male	brain
2	chr18:25625800-25630800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:25625800-25643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
5	chr18:25626000-25629800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr18:25626000-25643200	Weak transcription	HUVEC	blood vessel
7	chr18:25626200-25630800	Weak transcription	Osteobl	bone
8	chr18:25627400-25629800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr18:25627600-25645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr18:25627800-25629600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr18:25628200-25630200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr18:25628400-25629400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr18:25628400-25629400	Enhancers	NH-A	brain
14	chr18:25628400-25629800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr18:25628400-25629800	Enhancers	Liver	Liver
16	chr18:25628400-25630000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr18:25628400-25630000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr18:25628400-25630000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr18:25628400-25630000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr18:25628800-25629600	Active TSS	A549	lung
21	chr18:25628800-25629800	Enhancers	Fetal Heart	heart
22	chr18:25628800-25630000	Enhancers	Brain Angular Gyrus	brain
23	chr18:25628800-25630400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr18:25629000-25629400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr18:25629000-25629400	Enhancers	Aorta	Aorta
26	chr18:25629000-25629400	Flanking Active TSS	Brain Hippocampus Middle	brain
27	chr18:25629000-25629600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr18:25629000-25630000	Enhancers	Brain Cingulate Gyrus	brain
29	chr18:25629000-25630000	Enhancers	Brain Germinal Matrix	brain
30	chr18:25629000-25630800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr18:25629000-25630800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr18:25629200-25629400	Flanking Active TSS	Brain Substantia Nigra	brain
33	chr18:25629200-25629800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr18:25629200-25630200	Enhancers	Brain Anterior Caudate	brain
35	chr18:25629200-25630200	Strong transcription	HSMM	muscle
36	chr18:25629200-25630800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr18:25629200-25630800	Enhancers	Left Ventricle	heart
38	chr18:25629200-25632800	Weak transcription	Fetal Brain Female	brain

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