Variant report

Variant	rs671798
Chromosome Location	chr18:25631348-25631349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs641876	0.82[YRI][hapmap]
rs642680	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs655461	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs660656	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7241239	1.00[AMR][1000 genomes]
rs73400040	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25618400-25631600	Weak transcription	Fetal Brain Male	brain
2	chr18:25625800-25643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
4	chr18:25626000-25643200	Weak transcription	HUVEC	blood vessel
5	chr18:25627600-25645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr18:25629200-25632800	Weak transcription	Fetal Brain Female	brain
7	chr18:25629400-25643000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:25629600-25631800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:25629600-25632000	Weak transcription	A549	lung
10	chr18:25630000-25634000	Weak transcription	Brain Angular Gyrus	brain
11	chr18:25630000-25634200	Weak transcription	Brain Substantia Nigra	brain
12	chr18:25630000-25643200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr18:25630000-25643200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr18:25630200-25632000	Enhancers	Fetal Heart	heart
15	chr18:25630200-25642400	Weak transcription	HSMM	muscle
16	chr18:25630400-25631400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr18:25630400-25637600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr18:25630600-25632400	Weak transcription	NH-A	brain
19	chr18:25630800-25631600	Enhancers	Osteobl	bone
20	chr18:25630800-25632000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr18:25630800-25632800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr18:25630800-25633000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:25630800-25633000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr18:25630800-25634600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr18:25630800-25641200	Weak transcription	Left Ventricle	heart
26	chr18:25631000-25631400	Enhancers	HUES64 Cell Line	embryonic stem cell

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