Variant report

Variant	rs73400040
Chromosome Location	chr18:25623283-25623284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs671798	1.00[AMR][1000 genomes]
rs7241239	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7243202	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25615200-25624600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:25616800-25625000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr18:25617000-25625000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr18:25617000-25628800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr18:25617400-25625000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr18:25617400-25625200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr18:25618000-25624200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:25618000-25624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr18:25618400-25631600	Weak transcription	Fetal Brain Male	brain
10	chr18:25619400-25623800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr18:25619400-25625000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr18:25619400-25625400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr18:25619600-25625200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr18:25619800-25625000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr18:25620200-25625400	Weak transcription	Right Atrium	heart
16	chr18:25620400-25624200	Weak transcription	Liver	Liver
17	chr18:25620400-25625000	Weak transcription	Brain Hippocampus Middle	brain
18	chr18:25620400-25625000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr18:25620400-25625200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr18:25620400-25625400	Weak transcription	Brain Substantia Nigra	brain
21	chr18:25620400-25627400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:25620400-25627600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:25620400-25629200	Weak transcription	Left Ventricle	heart
24	chr18:25620600-25624200	Weak transcription	Brain Anterior Caudate	brain
25	chr18:25620600-25625200	Weak transcription	Brain Angular Gyrus	brain
26	chr18:25620600-25625400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr18:25620600-25625400	Weak transcription	HUVEC	blood vessel
28	chr18:25621200-25625200	Weak transcription	A549	lung
29	chr18:25621200-25625400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr18:25621400-25625000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr18:25621600-25623600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr18:25621600-25628200	Weak transcription	Fetal Brain Female	brain
33	chr18:25621800-25623600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr18:25621800-25623600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr18:25621800-25624200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr18:25621800-25624400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr18:25621800-25625200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr18:25621800-25625200	Weak transcription	Brain Germinal Matrix	brain
39	chr18:25621800-25628200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr18:25622000-25625400	Weak transcription	HSMM	muscle
41	chr18:25622400-25624400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr18:25622400-25625000	Weak transcription	NH-A	brain
43	chr18:25622400-25625200	Weak transcription	Osteobl	bone
44	chr18:25622600-25625000	Weak transcription	Fetal Heart	heart
45	chr18:25622800-25623600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr18:25623200-25623800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr18:25623200-25624800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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