Variant report

Variant	rs17495279
Chromosome Location	chr18:25741737-25741738
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr18:25741599-25742438	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	18:25739208-25741005..18:25741005-25741912	H1-hESC	embryonic stem cell:	embryo
2	chr18:25740858..25743576-chr18:25744029..25745634,2	MCF-7	breast:

Variant related genes	Relation type
CDH2	TF binding region
ENSG00000170558	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11661487	0.81[AFR][1000 genomes]
rs11874478	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs17536968	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1944288	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs2191636	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs6508526	0.85[YRI][hapmap]
rs6508527	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6508528	0.85[YRI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
4	chr18:25733600-25743400	Weak transcription	Fetal Brain Male	brain
5	chr18:25734000-25743200	Weak transcription	Fetal Brain Female	brain
6	chr18:25734400-25742200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:25734600-25748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:25734800-25749200	Weak transcription	Fetal Kidney	kidney
9	chr18:25735600-25741800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:25736000-25742200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr18:25736800-25747400	Enhancers	Liver	Liver
12	chr18:25737200-25743600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr18:25738200-25742800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr18:25738600-25742200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr18:25738600-25743000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr18:25738600-25743200	Weak transcription	Brain Hippocampus Middle	brain
17	chr18:25738800-25754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr18:25739200-25743600	Enhancers	HepG2	liver
19	chr18:25739200-25747200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr18:25739400-25741800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr18:25739400-25741800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr18:25739400-25742000	Weak transcription	A549	lung
23	chr18:25739400-25742200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr18:25739400-25742200	Weak transcription	Brain Angular Gyrus	brain
25	chr18:25739400-25742200	Weak transcription	Fetal Intestine Small	intestine
26	chr18:25739400-25742400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr18:25739400-25742600	Weak transcription	Brain Anterior Caudate	brain
28	chr18:25739400-25751800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr18:25739600-25741800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr18:25739600-25742200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr18:25740200-25743000	Enhancers	Right Atrium	heart
32	chr18:25740400-25741800	Weak transcription	Fetal Intestine Large	intestine
33	chr18:25740600-25741800	Weak transcription	Ovary	ovary
34	chr18:25740600-25742400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr18:25740600-25743800	Enhancers	Osteobl	bone
36	chr18:25740800-25741800	Weak transcription	Left Ventricle	heart
37	chr18:25740800-25742200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr18:25740800-25742400	Weak transcription	Right Ventricle	heart
39	chr18:25740800-25743200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr18:25741000-25741800	Weak transcription	NH-A	brain
41	chr18:25741000-25742200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr18:25741000-25742200	Weak transcription	Brain Germinal Matrix	brain
43	chr18:25741000-25746800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr18:25741200-25741800	Enhancers	Fetal Heart	heart
45	chr18:25741200-25742200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr18:25741200-25744800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr18:25741200-25753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr18:25741400-25742000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr18:25741600-25742400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr18:25741600-25743400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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