Variant report

Variant	rs17446875
Chromosome Location	chr18:25728693-25728694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10853682	1.00[JPT][hapmap]
rs11083249	1.00[JPT][hapmap]
rs11083250	1.00[JPT][hapmap]
rs11083252	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564299	0.90[CEU][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564310	1.00[JPT][hapmap]
rs11564336	1.00[JPT][hapmap]
rs11564341	1.00[JPT][hapmap]
rs11564381	1.00[JPT][hapmap]
rs11564387	1.00[CHB][hapmap]
rs11564388	1.00[CHB][hapmap]
rs11564390	1.00[CHB][hapmap]
rs11564392	1.00[CHB][hapmap]
rs11661487	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11872284	1.00[JPT][hapmap]
rs11874384	1.00[JPT][hapmap]
rs11874478	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185349	1.00[JPT][hapmap]
rs12454164	1.00[JPT][hapmap]
rs12457737	1.00[JPT][hapmap]
rs12457781	1.00[JPT][hapmap]
rs12458418	0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12953509	1.00[JPT][hapmap]
rs12956036	1.00[JPT][hapmap]
rs12959867	1.00[JPT][hapmap]
rs12960181	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443449	1.00[JPT][hapmap]
rs17446484	1.00[CHB][hapmap]
rs17446505	1.00[JPT][hapmap]
rs17446547	1.00[JPT][hapmap]
rs17446616	1.00[CHB][hapmap]
rs17446644	1.00[CHB][hapmap]
rs17468924	1.00[JPT][hapmap]
rs17469001	1.00[JPT][hapmap]
rs17469008	1.00[CHB][hapmap]
rs17469371	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469385	1.00[YRI][hapmap]
rs17536472	1.00[JPT][hapmap]
rs1860642	1.00[JPT][hapmap]
rs1944288	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067772	1.00[JPT][hapmap]
rs2155765	1.00[CHB][hapmap]
rs2155766	1.00[CHB][hapmap]
rs2191636	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4800289	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4800842	1.00[JPT][hapmap]
rs6508526	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719723	1.00[JPT][hapmap]
rs7243759	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8089347	1.00[JPT][hapmap]
rs8091862	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8094132	1.00[CHB][hapmap]
rs8095341	1.00[JPT][hapmap]
rs9946601	1.00[CHB][hapmap]
rs9950633	1.00[CHB][hapmap]
rs9956424	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25703800-25730000	Weak transcription	Aorta	Aorta
2	chr18:25710600-25731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr18:25712600-25730000	Weak transcription	Left Ventricle	heart
4	chr18:25716800-25730400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:25717600-25753400	Weak transcription	Dnd41	blood
6	chr18:25720800-25730000	Weak transcription	Fetal Kidney	kidney
7	chr18:25721400-25730000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr18:25724000-25732400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:25724000-25732800	Weak transcription	Gastric	stomach
10	chr18:25725000-25729800	Enhancers	Fetal Heart	heart
11	chr18:25725000-25731600	Enhancers	Liver	Liver
12	chr18:25725600-25731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr18:25726000-25739200	Weak transcription	HSMM	muscle
14	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr18:25726600-25729200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:25726800-25731000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr18:25727000-25729200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr18:25727000-25730000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr18:25727000-25731000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr18:25727200-25728800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr18:25727200-25728800	Enhancers	Osteobl	bone
22	chr18:25727200-25731000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr18:25727400-25728800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr18:25727400-25728800	Enhancers	Brain Angular Gyrus	brain
25	chr18:25727400-25728800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr18:25727400-25728800	Enhancers	HUVEC	blood vessel
27	chr18:25727600-25728800	Enhancers	Brain Substantia Nigra	brain
28	chr18:25727600-25728800	Enhancers	NH-A	brain
29	chr18:25727600-25729200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr18:25727600-25729200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr18:25727600-25729200	Enhancers	Fetal Brain Female	brain
32	chr18:25727600-25729200	Enhancers	A549	lung
33	chr18:25727600-25729400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr18:25727800-25728800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr18:25727800-25728800	Enhancers	HSMMtube	muscle
36	chr18:25727800-25729800	Weak transcription	Brain Germinal Matrix	brain
37	chr18:25727800-25732200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr18:25728000-25728800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr18:25728000-25728800	Enhancers	Brain Anterior Caudate	brain
40	chr18:25728000-25729200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr18:25728000-25731000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr18:25728000-25731400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr18:25728000-25737400	Weak transcription	Fetal Lung	lung
44	chr18:25728200-25732200	Weak transcription	Fetal Brain Male	brain
45	chr18:25728200-25732400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr18:25728200-25739200	Weak transcription	HepG2	liver
47	chr18:25728400-25728800	Enhancers	H9 Cell Line	embryonic stem cell
48	chr18:25728400-25728800	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr18:25728400-25729200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr18:25728400-25729200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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