Variant report

Variant	rs7243759
Chromosome Location	chr18:25750331-25750332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11083252	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564299	0.90[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11661487	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11874478	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12458418	1.00[ASN][1000 genomes]
rs12960181	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446875	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469371	0.95[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944288	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191636	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4800289	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6508526	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8091862	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
3	chr18:25738800-25754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:25739400-25751800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr18:25741200-25753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:25742400-25751800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:25742600-25751800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr18:25742600-25754200	Weak transcription	Brain Angular Gyrus	brain
9	chr18:25742800-25755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr18:25743000-25751600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr18:25743400-25753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr18:25743600-25750400	Weak transcription	Left Ventricle	heart
13	chr18:25744800-25754200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr18:25745000-25753800	Weak transcription	HSMM	muscle
15	chr18:25746200-25751400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr18:25746600-25752000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr18:25747200-25753600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr18:25747400-25751600	Enhancers	Fetal Heart	heart
19	chr18:25747400-25751800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr18:25747600-25753800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr18:25748000-25751800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr18:25748400-25751600	Weak transcription	Brain Anterior Caudate	brain
23	chr18:25748400-25752600	Weak transcription	Right Atrium	heart
24	chr18:25749000-25752800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr18:25749000-25754000	Enhancers	HepG2	liver
26	chr18:25749200-25750400	Enhancers	Fetal Brain Female	brain
27	chr18:25749200-25751000	Enhancers	Liver	Liver
28	chr18:25749200-25753400	Weak transcription	Osteobl	bone
29	chr18:25749800-25752000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr18:25749800-25759200	Active TSS	Right Ventricle	heart
31	chr18:25750000-25750400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:25750000-25750600	Weak transcription	NH-A	brain
33	chr18:25750000-25752600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr18:25750200-25750800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr18:25750200-25751600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr18:25750200-25751600	Weak transcription	Brain Germinal Matrix	brain
37	chr18:25750200-25752800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr18:25750200-25752800	Weak transcription	A549	lung
39	chr18:25750200-25754000	Weak transcription	Fetal Kidney	kidney

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