Variant report

Variant	rs12454989
Chromosome Location	chr18:40313140-40313141
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12454144	0.80[EUR][1000 genomes]
rs12454146	0.80[EUR][1000 genomes]
rs12454214	0.80[EUR][1000 genomes]
rs12456082	0.86[EUR][1000 genomes]
rs12456498	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12457128	0.82[EUR][1000 genomes]
rs12458705	0.86[EUR][1000 genomes]
rs12605254	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13313639	0.87[EUR][1000 genomes]
rs1346889	0.80[EUR][1000 genomes]
rs1346890	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1430908	0.81[EUR][1000 genomes]
rs1430910	0.86[EUR][1000 genomes]
rs1430911	0.86[EUR][1000 genomes]
rs1430912	0.86[EUR][1000 genomes]
rs1835496	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1835497	0.81[EUR][1000 genomes]
rs2051334	0.82[EUR][1000 genomes]
rs2116100	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2116101	0.80[EUR][1000 genomes]
rs28456360	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3810037	0.89[EUR][1000 genomes]
rs3861288	0.89[EUR][1000 genomes]
rs3910100	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3910101	0.89[EUR][1000 genomes]
rs4263023	0.81[EUR][1000 genomes]
rs4632207	0.86[EUR][1000 genomes]
rs58137875	0.80[EUR][1000 genomes]
rs606140	0.88[EUR][1000 genomes]
rs714298	0.80[AMR][1000 genomes]
rs7234212	0.80[EUR][1000 genomes]
rs7242107	0.80[EUR][1000 genomes]
rs7359732	0.80[EUR][1000 genomes]
rs7359791	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8085433	0.82[EUR][1000 genomes]
rs8085638	0.86[EUR][1000 genomes]
rs8085804	0.85[EUR][1000 genomes]
rs8085891	0.80[EUR][1000 genomes]
rs8086502	0.85[EUR][1000 genomes]
rs8088723	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8092254	0.88[EUR][1000 genomes]
rs8092588	0.85[EUR][1000 genomes]
rs8093235	0.84[EUR][1000 genomes]
rs8093431	0.84[EUR][1000 genomes]
rs8093569	0.84[EUR][1000 genomes]
rs8097737	0.86[EUR][1000 genomes]
rs8099810	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs919563	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9652967	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9652968	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9916901	0.81[EUR][1000 genomes]
rs9944914	0.84[EUR][1000 genomes]
rs9953625	0.82[EUR][1000 genomes]
rs9954391	0.86[EUR][1000 genomes]
rs9959873	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9963299	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9965523	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9973172	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40310400-40317400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:40310800-40314600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr18:40310800-40322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:40311000-40316200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links