Variant report

Variant	rs12456498
Chromosome Location	chr18:40236600-40236601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs12454144	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12454146	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12454214	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12454989	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12456082	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12457128	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12458705	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12605254	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1346889	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1346890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1430908	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430910	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1430911	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1430912	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1835496	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835497	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051334	0.85[EUR][1000 genomes]
rs2116100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116101	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28456360	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28805389	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3861285	0.91[EUR][1000 genomes]
rs3910100	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4263023	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4632207	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58137875	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs626676	0.91[EUR][1000 genomes]
rs633289	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs652050	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs658728	0.88[EUR][1000 genomes]
rs714295	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs714298	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7234212	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7236623	0.91[EUR][1000 genomes]
rs7236781	0.91[EUR][1000 genomes]
rs7242107	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359732	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8084332	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085433	0.87[EUR][1000 genomes]
rs8085638	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8085891	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8088723	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8092254	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8092588	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8093235	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8093431	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8093569	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8097737	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8098670	0.91[EUR][1000 genomes]
rs8099810	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919563	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652967	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9652968	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9916901	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944914	0.82[EUR][1000 genomes]
rs9949554	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9953625	0.85[EUR][1000 genomes]
rs9954391	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9954750	0.89[ASN][1000 genomes]
rs9955013	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9959873	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9963299	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9965523	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40230200-40241600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:40234800-40236600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr18:40234800-40239800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr18:40236200-40239000	Enhancers	Fetal Brain Female	brain
5	chr18:40236400-40236600	Enhancers	Fetal Brain Male	brain
6	chr18:40236600-40236800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr18:40236600-40237200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr18:40236600-40238200	Weak transcription	Fetal Brain Male	brain

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