Variant report

Variant	rs12456228
Chromosome Location	chr18:25405174-25405175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12457065	0.81[AMR][1000 genomes]
rs12458550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60259328	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1064665	chr18:25374753-25429234	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2760473	chr18:25386088-25571466	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv909478	chr18:25392569-25478085	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv909479	chr18:25398940-25502001	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25403600-25405200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:25403800-25405200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:25404800-25406200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:25404800-25406400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr18:25404800-25406400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr18:25404800-25406800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:25404800-25406800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr18:25404800-25407000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr18:25405000-25405800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr18:25405000-25406000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr18:25405000-25406000	Enhancers	Brain Germinal Matrix	brain
12	chr18:25405000-25406200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr18:25405000-25407000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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