Variant report

Variant	rs12456383
Chromosome Location	chr18:13411010-13411011
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13409251..13411085-chr18:13412554..13414452,2	MCF-7	breast:
2	chr18:13405836..13407937-chr18:13409257..13411379,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12962774	0.81[EUR][1000 genomes]
rs4797769	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4797770	0.81[EUR][1000 genomes]
rs8099000	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13383600-13411800	Weak transcription	Esophagus	oesophagus
2	chr18:13383600-13421200	Weak transcription	Gastric	stomach
3	chr18:13383800-13412000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr18:13385600-13420800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr18:13388800-13411800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr18:13388800-13416800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr18:13389000-13412000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr18:13390400-13425600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr18:13391400-13412000	Weak transcription	Aorta	Aorta
10	chr18:13394000-13411800	Weak transcription	Fetal Lung	lung
11	chr18:13394800-13412000	Weak transcription	Brain Anterior Caudate	brain
12	chr18:13395000-13426600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:13395200-13411800	Weak transcription	Dnd41	blood
14	chr18:13395200-13412800	Weak transcription	Brain Angular Gyrus	brain
15	chr18:13395600-13411400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr18:13398000-13411800	Weak transcription	Fetal Stomach	stomach
17	chr18:13398800-13415800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr18:13399000-13418000	Weak transcription	Pancreas	Pancrea
19	chr18:13400600-13413000	Weak transcription	Spleen	Spleen
20	chr18:13401400-13416200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr18:13401800-13415000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr18:13402200-13415400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr18:13402200-13415600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr18:13402400-13411800	Weak transcription	Fetal Brain Female	brain
25	chr18:13403400-13426400	Weak transcription	Brain Hippocampus Middle	brain
26	chr18:13403800-13416200	Weak transcription	Colon Smooth Muscle	Colon
27	chr18:13404400-13411600	Weak transcription	Fetal Intestine Small	intestine
28	chr18:13406400-13411800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr18:13406800-13412800	Weak transcription	Fetal Heart	heart
30	chr18:13406800-13414200	Weak transcription	Psoas Muscle	Psoas
31	chr18:13406800-13414200	Weak transcription	Right Ventricle	heart
32	chr18:13407600-13427400	Weak transcription	Brain Substantia Nigra	brain
33	chr18:13407800-13412800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr18:13407800-13414200	Weak transcription	Left Ventricle	heart
35	chr18:13408000-13412600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr18:13408800-13411200	Strong transcription	Primary T cells from cord blood	blood
37	chr18:13408800-13411800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr18:13409200-13411800	Weak transcription	Brain Germinal Matrix	brain
39	chr18:13409200-13411800	Strong transcription	Fetal Thymus	thymus
40	chr18:13409200-13415600	Weak transcription	Liver	Liver
41	chr18:13409400-13414600	Weak transcription	Small Intestine	intestine
42	chr18:13410200-13411400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr18:13410400-13411200	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr18:13410400-13411600	Enhancers	Duodenum Mucosa	Duodenum
45	chr18:13410600-13411200	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr18:13410800-13411400	Enhancers	Fetal Intestine Large	intestine
47	chr18:13410800-13417000	Weak transcription	Stomach Mucosa	stomach
48	chr18:13411000-13411800	Strong transcription	Thymus	Thymus

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