Variant report

Variant	rs8099000
Chromosome Location	chr18:13400714-13400715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13394064..13395810-chr18:13400395..13403052,2	MCF-7	breast:
2	chr18:13393576..13396223-chr18:13399104..13400779,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12456383	0.83[EUR][1000 genomes]
rs4797769	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8096336	0.92[ASW][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13383400-13409000	Weak transcription	Small Intestine	intestine
2	chr18:13383600-13410200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr18:13383600-13411800	Weak transcription	Esophagus	oesophagus
4	chr18:13383600-13421200	Weak transcription	Gastric	stomach
5	chr18:13383800-13412000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr18:13385200-13405800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr18:13385600-13420800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr18:13388800-13411800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr18:13388800-13416800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr18:13389000-13412000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr18:13389200-13410000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr18:13389400-13405800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr18:13389400-13406000	Weak transcription	Adipose Nuclei	Adipose
14	chr18:13389400-13407600	Weak transcription	Fetal Muscle Leg	muscle
15	chr18:13390400-13425600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr18:13390600-13401400	Weak transcription	Right Ventricle	heart
17	chr18:13390600-13406000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr18:13390800-13402800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr18:13391400-13412000	Weak transcription	Aorta	Aorta
20	chr18:13393200-13400800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr18:13394000-13405400	Weak transcription	Liver	Liver
22	chr18:13394000-13411800	Weak transcription	Fetal Lung	lung
23	chr18:13394800-13412000	Weak transcription	Brain Anterior Caudate	brain
24	chr18:13395000-13426600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr18:13395200-13400800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr18:13395200-13406000	Weak transcription	Right Atrium	heart
27	chr18:13395200-13406200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr18:13395200-13411800	Weak transcription	Dnd41	blood
29	chr18:13395200-13412800	Weak transcription	Brain Angular Gyrus	brain
30	chr18:13395400-13403400	Weak transcription	Colon Smooth Muscle	Colon
31	chr18:13395600-13411400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr18:13396000-13401600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr18:13396400-13404800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr18:13397600-13402400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr18:13398000-13411800	Weak transcription	Fetal Stomach	stomach
36	chr18:13398200-13403000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr18:13398400-13401000	Weak transcription	Left Ventricle	heart
38	chr18:13398600-13401400	Weak transcription	Fetal Brain Male	brain
39	chr18:13398800-13401200	Weak transcription	Fetal Brain Female	brain
40	chr18:13398800-13415800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr18:13399000-13418000	Weak transcription	Pancreas	Pancrea
42	chr18:13399600-13401400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr18:13399600-13402800	Genic enhancers	Thymus	Thymus
44	chr18:13400000-13402600	Weak transcription	Fetal Heart	heart
45	chr18:13400000-13403600	Genic enhancers	Fetal Thymus	thymus
46	chr18:13400000-13406200	Weak transcription	Fetal Intestine Large	intestine
47	chr18:13400600-13401800	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr18:13400600-13402000	Enhancers	Primary T cells from cord blood	blood
49	chr18:13400600-13402200	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr18:13400600-13413000	Weak transcription	Spleen	Spleen

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