Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12457952	0.88[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962825	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs173032	0.89[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs17663127	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs193095	0.89[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs2241891	0.88[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs335514	0.90[ASN][1000 genomes]
rs335515	0.97[ASN][1000 genomes]
rs335516	0.88[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs335517	0.88[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs335518	0.88[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs335519	0.89[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs4799639	0.88[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs4799640	0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs57787388	0.85[ASN][1000 genomes]
rs59324074	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60487427	0.83[EUR][1000 genomes]
rs62095611	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6506962	0.88[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs7244677	0.97[ASN][1000 genomes]
rs7245136	0.89[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs9948943	0.88[CHB][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29784600-29795200	Enhancers	Fetal Intestine Large	intestine
2	chr18:29786800-29795200	Enhancers	Fetal Intestine Small	intestine
3	chr18:29793000-29794600	Enhancers	HepG2	liver
4	chr18:29793200-29794400	Enhancers	Duodenum Mucosa	Duodenum
5	chr18:29793200-29794600	Enhancers	Liver	Liver

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