Variant report

Variant	rs57787388
Chromosome Location	chr18:29818755-29818756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12458880	0.85[ASN][1000 genomes]
rs16962825	0.84[ASN][1000 genomes]
rs173032	0.82[ASN][1000 genomes]
rs17663127	0.82[ASN][1000 genomes]
rs193095	0.82[ASN][1000 genomes]
rs2241891	0.81[ASN][1000 genomes]
rs335514	0.87[ASN][1000 genomes]
rs335515	0.82[ASN][1000 genomes]
rs335516	0.81[ASN][1000 genomes]
rs335517	0.82[ASN][1000 genomes]
rs335518	0.81[ASN][1000 genomes]
rs335519	0.81[ASN][1000 genomes]
rs4799639	0.81[ASN][1000 genomes]
rs4799640	0.82[ASN][1000 genomes]
rs59324074	0.86[ASN][1000 genomes]
rs62095611	0.84[ASN][1000 genomes]
rs6506962	0.81[ASN][1000 genomes]
rs7244677	0.82[ASN][1000 genomes]
rs7245136	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29814200-29819000	Enhancers	Fetal Intestine Large	intestine
2	chr18:29816400-29818800	Weak transcription	Aorta	Aorta
3	chr18:29817600-29822200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr18:29818000-29818800	Enhancers	Fetal Intestine Small	intestine
5	chr18:29818200-29819000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr18:29818400-29818800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr18:29818400-29818800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr18:29818400-29819000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr18:29818400-29819000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr18:29818600-29818800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr18:29818600-29819000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr18:29818600-29819000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr18:29818600-29819000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr18:29818600-29819800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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