Variant report

Variant	rs12459186
Chromosome Location	chr19:44375347-44375348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1865108	0.81[CEU][hapmap]
rs189445	0.86[CEU][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2195980	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs239947	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs349026	0.93[CEU][hapmap];0.81[JPT][hapmap]
rs349027	0.93[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes]
rs349035	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs349036	0.93[CEU][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs349037	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs443389	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs450880	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7251009	0.84[EUR][1000 genomes]
rs7258953	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458710	chr19:44339960-44410846	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv579853	chr19:44339960-44410846	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv912108	chr19:44358761-44435167	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv961294	chr19:44359970-44384503	ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44371200-44381600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44371200-44381600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44371800-44381400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:44371800-44381600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:44373400-44381600	ZNF genes & repeats	Liver	Liver
6	chr19:44374200-44377600	Active TSS	Right Atrium	heart
7	chr19:44374400-44375600	ZNF genes & repeats	Psoas Muscle	Psoas
8	chr19:44374400-44379600	ZNF genes & repeats	Brain Anterior Caudate	brain
9	chr19:44375000-44375400	ZNF genes & repeats	Primary T cells from cord blood	blood
10	chr19:44375000-44375600	ZNF genes & repeats	Brain Hippocampus Middle	brain
11	chr19:44375000-44378400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr19:44375200-44376600	Weak transcription	Left Ventricle	heart
13	chr19:44375200-44377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr19:44375200-44378000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:44375200-44380000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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