The 2.0 version of rSNPBase

Variant report

Variant rs12461097
Chromosome Location chr19:35658380-35658381
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:35648000-35661600 Strong transcription H1 Cell Line embryonic stem cell
2 chr19:35648000-35661800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr19:35648200-35662800 Strong transcription HUES48 Cell Line embryonic stem cell
4 chr19:35652000-35661800 Strong transcription iPS-15b Cell Line embryonic stem cell
5 chr19:35652400-35658400 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
6 chr19:35652400-35658400 ZNF genes & repeats Lung lung
7 chr19:35652400-35658600 ZNF genes & repeats Placenta Placenta
8 chr19:35653400-35663800 Weak transcription Stomach Mucosa stomach
9 chr19:35653600-35667400 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr19:35653800-35658800 Strong transcription Dnd41 blood
11 chr19:35653800-35659000 Strong transcription Placenta Amnion Placenta Amnion
12 chr19:35653800-35661400 Strong transcription Primary neutrophils fromperipheralblood blood
13 chr19:35655200-35667600 Weak transcription Colonic Mucosa Colon
14 chr19:35655600-35658800 Strong transcription NHDF-Ad bronchial
15 chr19:35655600-35659000 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr19:35655600-35661400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr19:35656200-35658800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
18 chr19:35656600-35658400 ZNF genes & repeats Spleen Spleen
19 chr19:35656800-35658400 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr19:35656800-35658400 ZNF genes & repeats Fetal Stomach stomach
21 chr19:35656800-35658800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
22 chr19:35657000-35659200 Genic enhancers Primary B cells from peripheral blood blood
23 chr19:35657000-35659200 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
24 chr19:35657200-35658400 Strong transcription Gastric stomach
25 chr19:35657200-35658400 Transcr. at gene 5' and 3' Monocytes-CD14+_RO01746 blood
26 chr19:35657200-35660400 Genic enhancers Primary T cells fromperipheralblood blood
27 chr19:35657400-35658800 Transcr. at gene 5' and 3' Primary T cells from cord blood blood
28 chr19:35657400-35658800 Strong transcription NH-A brain
29 chr19:35657400-35659000 Genic enhancers Primary B cells from cord blood blood
30 chr19:35657400-35662200 Weak transcription Small Intestine intestine
31 chr19:35657400-35663200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr19:35657600-35658800 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
33 chr19:35657600-35659000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr19:35657600-35659600 Genic enhancers Primary T helper cells fromperipheralblood blood
35 chr19:35657600-35660200 Genic enhancers Primary T cells effector/memory enriched fromperipheralblood blood
36 chr19:35657600-35660400 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
37 chr19:35657600-35660600 Genic enhancers Primary T regulatory cells fromperipheralblood blood
38 chr19:35657600-35661800 Strong transcription HUES64 Cell Line embryonic stem cell
39 chr19:35657600-35663000 Weak transcription Duodenum Mucosa Duodenum
40 chr19:35657600-35666800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr19:35657800-35658400 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
42 chr19:35657800-35658400 Strong transcription Aorta Aorta
43 chr19:35657800-35658400 Genic enhancers Thymus Thymus
44 chr19:35657800-35659000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr19:35657800-35659000 Enhancers Fetal Thymus thymus
46 chr19:35657800-35659400 Strong transcription ES-I3 Cell Line embryonic stem cell
47 chr19:35657800-35659400 Enhancers Primary hematopoietic stem cells blood
48 chr19:35657800-35659400 Genic enhancers Primary T helper naive cells from peripheral blood blood
49 chr19:35657800-35659400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
50 chr19:35657800-35659400 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015