Variant report
| Variant | rs12463652 |
|---|---|
| Chromosome Location | chr7:146891781-146891782 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11684649 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12472189 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12475450 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12477784 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1439685 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1439688 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1583756 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17016806 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs17016866 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs17400673 | 0.87[EUR][1000 genomes] |
| rs28876727 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62145360 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62145361 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62145380 | 1.00[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62145381 | 1.00[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62145382 | 1.00[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62146651 | 0.96[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs62146652 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs62148571 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62148577 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933033 | chr7:146720301-147081560 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033898 | chr7:146721499-147081768 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv889395 | chr7:146848251-146969389 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv889396 | chr7:146854133-147035067 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:146890600-146897200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
