Variant report

Variant	rs28876727
Chromosome Location	chr2:56548991-56548992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11684649	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12463652	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12472189	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12475450	0.84[EUR][1000 genomes]
rs12477784	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1439685	0.84[EUR][1000 genomes]
rs1439688	0.85[EUR][1000 genomes]
rs1583756	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17016806	0.82[EUR][1000 genomes]
rs17016866	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17400673	0.87[EUR][1000 genomes]
rs62145360	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62145361	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62145380	0.99[EUR][1000 genomes]
rs62145381	0.99[EUR][1000 genomes]
rs62145382	0.99[EUR][1000 genomes]
rs62146651	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62146652	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62148571	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62148577	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527600-56561000	Weak transcription	HSMM	muscle
2	chr2:56546200-56552800	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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