Variant report

Variant	rs12463864
Chromosome Location	chr2:212708325-212708326
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10497950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10497951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10497952	1.00[CEU][hapmap]
rs10804201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10932407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10932408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10932410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11892696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11893981	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11894784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11894876	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11901045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12618183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12618478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12621282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12989469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12991661	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs12992022	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs12996321	1.00[CEU][hapmap]
rs12998554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12999352	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13002463	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs13002674	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13003524	1.00[CEU][hapmap]
rs13005396	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs13012677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13019270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13021925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13022306	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13025766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13028597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13029024	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13031164	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13035912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1371199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1371200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1371201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1439233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1439234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1439235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1439236	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1439237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1439242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1439254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16846873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs16846917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs16847082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16847087	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs16847122	1.00[CEU][hapmap]
rs16847160	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2118891	1.00[CHB][hapmap]
rs4606869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4673638	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5006044	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap]
rs7565912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7570078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs984773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs991476	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs991477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap]
rs991495	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875785	chr2:212683946-212752193	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212707800-212708600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212707800-212709000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:212707800-212712600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:212708000-212708400	Enhancers	Fetal Brain Male	brain

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