Variant report

Variant	rs16847160
Chromosome Location	chr2:212739554-212739555
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10497950	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10497951	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10497952	0.94[CEU][hapmap]
rs10804201	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10932406	0.81[ASN][1000 genomes]
rs10932407	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10932408	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10932409	0.81[ASN][1000 genomes]
rs10932410	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11887198	0.81[ASN][1000 genomes]
rs11892696	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11893981	0.94[CEU][hapmap]
rs11894784	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11894876	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11901045	0.94[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs11903196	0.81[ASN][1000 genomes]
rs12463864	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12618183	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12618478	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12621282	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12989469	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12991661	0.94[CEU][hapmap]
rs12992022	0.94[CEU][hapmap]
rs12996321	0.94[CEU][hapmap]
rs12998554	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12999352	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs13002463	0.92[CEU][hapmap];0.81[ASN][1000 genomes]
rs13002674	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13003524	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs13005396	0.94[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs13012677	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs13019270	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs13021925	0.89[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13022306	0.93[CEU][hapmap]
rs13022395	0.81[ASN][1000 genomes]
rs13024750	0.81[ASN][1000 genomes]
rs13025766	0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs13027991	0.81[ASN][1000 genomes]
rs13028597	0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs13029024	0.94[CEU][hapmap]
rs13031164	0.93[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs13035912	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1371199	0.94[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs1371200	0.94[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs1371201	0.94[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1439233	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1439234	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1439235	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1439236	0.83[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1439237	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1439242	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1439254	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs16846873	0.94[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs16846917	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs16847082	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16847087	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs16847122	0.94[CEU][hapmap]
rs2118891	0.84[CHB][hapmap]
rs4606869	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4673638	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs5006044	0.83[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap]
rs7565912	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7570078	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs984773	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs991476	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs991477	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs991495	0.84[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs991496	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875785	chr2:212683946-212752193	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875786	chr2:212715410-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875787	chr2:212722988-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv875788	chr2:212722988-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv875789	chr2:212722988-212761152	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv875790	chr2:212731514-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv584323	chr2:212731514-212783175	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212734200-212741800	Weak transcription	HUVEC	blood vessel

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