The 2.0 version of rSNPBase

Variant report

Variant rs12464070
Chromosome Location chr2:55247477-55247478
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55203800-55258400 Weak transcription Esophagus oesophagus
2 chr2:55237600-55247800 Weak transcription Left Ventricle heart
3 chr2:55237600-55249600 Weak transcription Gastric stomach
4 chr2:55237600-55250200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr2:55237600-55258600 Weak transcription Ovary ovary
6 chr2:55237600-55272600 Weak transcription Fetal Stomach stomach
7 chr2:55238400-55249200 Weak transcription Pancreas Pancrea
8 chr2:55238400-55249600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr2:55238400-55250800 Weak transcription Primary T cells fromperipheralblood blood
10 chr2:55238400-55251200 Weak transcription Psoas Muscle Psoas
11 chr2:55238400-55252200 Weak transcription Fetal Thymus thymus
12 chr2:55238400-55252400 Weak transcription Thymus Thymus
13 chr2:55238400-55253200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr2:55239200-55247800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr2:55240400-55249200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr2:55240400-55249800 Weak transcription Primary T regulatory cells fromperipheralblood blood
17 chr2:55240600-55249000 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr2:55240800-55249600 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr2:55240800-55250200 Weak transcription Stomach Smooth Muscle stomach
20 chr2:55241000-55249000 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr2:55241000-55249000 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr2:55241000-55249600 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr2:55241000-55272400 Weak transcription Fetal Kidney kidney
24 chr2:55241200-55247800 Weak transcription Fetal Intestine Small intestine
25 chr2:55241200-55249000 Weak transcription Primary T helper cells fromperipheralblood blood
26 chr2:55241200-55249200 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr2:55241200-55249600 Weak transcription Fetal Heart heart
28 chr2:55241400-55249200 Weak transcription Primary T cells from cord blood blood
29 chr2:55241400-55253400 Weak transcription Fetal Lung lung
30 chr2:55241800-55247800 Weak transcription Lung lung
31 chr2:55242000-55252400 Weak transcription Fetal Muscle Trunk muscle
32 chr2:55242200-55249800 Weak transcription Fetal Brain Male brain
33 chr2:55242200-55253400 Weak transcription Duodenum Mucosa Duodenum
34 chr2:55242400-55253400 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr2:55242400-55258000 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr2:55242600-55248600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr2:55242800-55249000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr2:55243000-55249200 Weak transcription Small Intestine intestine
39 chr2:55243000-55250000 Weak transcription Colon Smooth Muscle Colon
40 chr2:55243000-55262400 Weak transcription Hela-S3 cervix
41 chr2:55243200-55252600 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr2:55243600-55249400 Weak transcription Spleen Spleen
43 chr2:55243800-55259800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr2:55244400-55247800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr2:55244600-55248800 Enhancers iPS-15b Cell Line embryonic stem cell
46 chr2:55244600-55249000 Strong transcription Fetal Brain Female brain
47 chr2:55244800-55248200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
48 chr2:55244800-55249600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
49 chr2:55244800-55249600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr2:55245000-55248000 Enhancers Primary B cells from cord blood blood

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Last update: Aug 31, 2015