The 2.0 version of rSNPBase

Variant report

Variant rs12477711
Chromosome Location chr2:55245177-55245178
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55203800-55258400 Weak transcription Esophagus oesophagus
2 chr2:55234800-55246000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr2:55237600-55246000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr2:55237600-55247800 Weak transcription Left Ventricle heart
5 chr2:55237600-55249600 Weak transcription Gastric stomach
6 chr2:55237600-55250200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr2:55237600-55258600 Weak transcription Ovary ovary
8 chr2:55237600-55272600 Weak transcription Fetal Stomach stomach
9 chr2:55238200-55245800 Weak transcription Brain Germinal Matrix brain
10 chr2:55238400-55249200 Weak transcription Pancreas Pancrea
11 chr2:55238400-55249600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr2:55238400-55250800 Weak transcription Primary T cells fromperipheralblood blood
13 chr2:55238400-55251200 Weak transcription Psoas Muscle Psoas
14 chr2:55238400-55252200 Weak transcription Fetal Thymus thymus
15 chr2:55238400-55252400 Weak transcription Thymus Thymus
16 chr2:55238400-55253200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr2:55239200-55247800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr2:55240400-55249200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
19 chr2:55240400-55249800 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr2:55240600-55249000 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr2:55240800-55249600 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr2:55240800-55250200 Weak transcription Stomach Smooth Muscle stomach
23 chr2:55241000-55249000 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr2:55241000-55249000 Weak transcription Primary T helper cells PMA-I stimulated --
25 chr2:55241000-55249600 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr2:55241000-55272400 Weak transcription Fetal Kidney kidney
27 chr2:55241200-55245600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr2:55241200-55247400 Weak transcription Fetal Intestine Large intestine
29 chr2:55241200-55247800 Weak transcription Fetal Intestine Small intestine
30 chr2:55241200-55249000 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr2:55241200-55249200 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr2:55241200-55249600 Weak transcription Fetal Heart heart
33 chr2:55241400-55246000 Weak transcription HUES6 Cell Line embryonic stem cell
34 chr2:55241400-55249200 Weak transcription Primary T cells from cord blood blood
35 chr2:55241400-55253400 Weak transcription Fetal Lung lung
36 chr2:55241800-55247800 Weak transcription Lung lung
37 chr2:55242000-55246000 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr2:55242000-55246000 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr2:55242000-55246400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr2:55242000-55252400 Weak transcription Fetal Muscle Trunk muscle
41 chr2:55242200-55246400 Enhancers Primary neutrophils fromperipheralblood blood
42 chr2:55242200-55249800 Weak transcription Fetal Brain Male brain
43 chr2:55242200-55253400 Weak transcription Duodenum Mucosa Duodenum
44 chr2:55242400-55246000 Weak transcription H1 Cell Line embryonic stem cell
45 chr2:55242400-55253400 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr2:55242400-55258000 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr2:55242600-55245800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr2:55242600-55248600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr2:55242800-55249000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr2:55243000-55246000 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015