Variant report

Variant	rs12465449
Chromosome Location	chr2:179681814-179681815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10171049	0.90[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes]
rs10179219	0.85[AFR][1000 genomes]
rs10190741	1.00[JPT][hapmap]
rs11902709	0.87[CEU][hapmap]
rs12464215	1.00[JPT][hapmap]
rs12464703	0.87[CEU][hapmap]
rs12468141	1.00[JPT][hapmap]
rs12470905	0.87[CEU][hapmap]
rs13386726	0.91[AFR][1000 genomes]
rs1569407	0.88[CHB][hapmap]
rs16866497	0.87[CEU][hapmap]
rs16866532	0.87[CEU][hapmap]
rs17453396	1.00[JPT][hapmap]
rs1883085	0.87[CEU][hapmap]
rs2054708	0.88[TSI][hapmap]
rs2243452	0.88[CHB][hapmap]
rs2253324	0.87[CEU][hapmap]
rs2288563	0.88[CHB][hapmap]
rs2291304	0.87[CEU][hapmap]
rs2291308	0.87[CEU][hapmap]
rs2291309	0.84[AMR][1000 genomes]
rs2291310	0.86[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes]
rs2291311	0.85[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes]
rs2291312	0.86[MEX][hapmap];0.84[AMR][1000 genomes]
rs2303829	0.88[CHB][hapmap]
rs2306636	0.87[CEU][hapmap]
rs2562829	0.87[CEU][hapmap]
rs2562844	0.88[CHB][hapmap]
rs2562849	0.88[CHB][hapmap]
rs2627037	0.95[MEX][hapmap];0.88[TSI][hapmap]
rs2627040	0.87[CEU][hapmap]
rs2742347	0.87[CEU][hapmap]
rs2742354	0.86[CHB][hapmap]
rs2742357	0.87[CEU][hapmap]
rs2742358	0.88[CHB][hapmap]
rs3754953	0.85[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes]
rs3769860	0.87[CEU][hapmap]
rs4894037	0.86[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes]
rs56030306	0.90[ASN][1000 genomes]
rs72647839	0.88[ASN][1000 genomes]
rs7585334	0.86[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes]
rs7604033	0.86[MEX][hapmap];0.81[AMR][1000 genomes]
rs922984	0.84[AMR][1000 genomes]
rs966783	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
3	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179673000-179682600	Weak transcription	Left Ventricle	heart
5	chr2:179673800-179683600	Weak transcription	HSMMtube	muscle
6	chr2:179674400-179691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:179676400-179684400	Weak transcription	Psoas Muscle	Psoas
8	chr2:179680800-179682200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:179681200-179683600	Weak transcription	Fetal Heart	heart
10	chr2:179681400-179683800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:179681400-179684800	Weak transcription	Primary T cells from cord blood	blood

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