Variant report

Variant	rs10179219
Chromosome Location	chr2:179672577-179672578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10179811	0.82[AMR][1000 genomes]
rs10183237	0.85[AMR][1000 genomes]
rs10183361	0.85[AMR][1000 genomes]
rs10221590	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10497519	0.87[AMR][1000 genomes]
rs11895382	0.82[AMR][1000 genomes]
rs12465449	0.85[AFR][1000 genomes]
rs13386186	0.83[AMR][1000 genomes]
rs13386726	0.85[AFR][1000 genomes]
rs13392492	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13398235	0.85[AMR][1000 genomes]
rs13421990	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1484120	0.82[AMR][1000 genomes]
rs1565288	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16866519	0.82[AMR][1000 genomes]
rs17355623	0.87[AMR][1000 genomes]
rs1905520	0.81[AMR][1000 genomes]
rs4893852	0.81[AMR][1000 genomes]
rs4893853	0.82[AMR][1000 genomes]
rs4894040	0.82[AMR][1000 genomes]
rs4894041	0.82[AMR][1000 genomes]
rs4894045	0.82[AMR][1000 genomes]
rs4894048	0.83[AMR][1000 genomes]
rs4894052	0.83[AMR][1000 genomes]
rs72647887	0.82[AMR][1000 genomes]
rs72647888	0.82[AMR][1000 genomes]
rs7572955	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179656800-179674400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
4	chr2:179664800-179673000	Active TSS	Right Atrium	heart
5	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:179667200-179673000	Active TSS	Right Ventricle	heart
7	chr2:179668400-179673000	ZNF genes & repeats	Fetal Heart	heart
8	chr2:179669600-179680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:179669800-179673200	Active TSS	Fetal Muscle Leg	muscle
10	chr2:179669800-179674600	Weak transcription	Primary T cells from cord blood	blood
11	chr2:179670000-179672800	Active TSS	Fetal Muscle Trunk	muscle
12	chr2:179670000-179674000	Active TSS	Psoas Muscle	Psoas
13	chr2:179670000-179674000	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr2:179671200-179674000	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr2:179671400-179672600	Enhancers	Gastric	stomach
16	chr2:179671400-179672600	Enhancers	Pancreas	Pancrea
17	chr2:179671800-179673000	Active TSS	Left Ventricle	heart
18	chr2:179672000-179672600	Enhancers	Fetal Thymus	thymus
19	chr2:179672200-179672800	Flanking Active TSS	HSMMtube	muscle
20	chr2:179672400-179672600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:179672400-179672600	Bivalent Enhancer	Fetal Brain Male	brain
22	chr2:179672400-179673000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:179672400-179673000	Enhancers	HSMM	muscle

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