Variant report

Variant	rs1565288
Chromosome Location	chr2:179673583-179673584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10176708	0.84[AMR][1000 genomes]
rs10179219	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10179811	0.89[AMR][1000 genomes]
rs10183237	0.82[AMR][1000 genomes]
rs10183361	0.82[AMR][1000 genomes]
rs10203085	0.84[AMR][1000 genomes]
rs10221590	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10497519	0.95[AMR][1000 genomes]
rs11888217	0.81[AMR][1000 genomes]
rs11895382	0.89[AMR][1000 genomes]
rs13386186	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13392492	0.87[AMR][1000 genomes]
rs13398235	0.82[AMR][1000 genomes]
rs13417645	0.86[AMR][1000 genomes]
rs13421990	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1484120	0.89[AMR][1000 genomes]
rs16866473	0.82[AMR][1000 genomes]
rs16866519	0.89[AMR][1000 genomes]
rs17355446	0.86[AMR][1000 genomes]
rs17355623	0.95[AMR][1000 genomes]
rs1905520	0.83[AMR][1000 genomes]
rs2562852	1.00[YRI][hapmap]
rs4893853	0.89[AMR][1000 genomes]
rs4894035	0.86[AMR][1000 genomes]
rs4894040	0.89[AMR][1000 genomes]
rs4894041	0.89[AMR][1000 genomes]
rs4894045	0.89[AMR][1000 genomes]
rs4894048	0.80[AMR][1000 genomes]
rs4894052	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72647887	0.89[AMR][1000 genomes]
rs72647888	0.89[AMR][1000 genomes]
rs72648950	0.86[AMR][1000 genomes]
rs7572955	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179656800-179674400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
4	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:179669600-179680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:179669800-179674600	Weak transcription	Primary T cells from cord blood	blood
7	chr2:179670000-179674000	Active TSS	Psoas Muscle	Psoas
8	chr2:179670000-179674000	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr2:179671200-179674000	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr2:179672600-179676200	Weak transcription	Pancreas	Pancrea
11	chr2:179673000-179674400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:179673000-179682600	Weak transcription	Left Ventricle	heart
13	chr2:179673200-179673600	Weak transcription	HSMMtube	muscle
14	chr2:179673200-179674400	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:179673400-179673600	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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