Variant report
| Variant | rs12465694 |
|---|---|
| Chromosome Location | chr2:151929965-151929966 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10169306 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs10187570 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10198544 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10205429 | 0.90[EUR][1000 genomes] |
| rs1074149 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13414651 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1485131 | 0.88[AFR][1000 genomes] |
| rs1601359 | 0.86[EUR][1000 genomes] |
| rs17197926 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17197940 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17270051 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs1843269 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1905742 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2062363 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2062364 | 0.90[EUR][1000 genomes] |
| rs2342552 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4374368 | 0.86[EUR][1000 genomes] |
| rs56317281 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62169063 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs62169068 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62169088 | 0.86[ASN][1000 genomes] |
| rs720066 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs749691 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525350 | chr2:151711700-152044794 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv523849 | chr2:151718133-152143524 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 3 | esv3693426 | chr2:151725792-152295862 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 4 | nsv1002140 | chr2:151833257-152054910 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:151927400-151941000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr2:151928400-151937400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
