Variant report

Variant	rs1905742
Chromosome Location	chr2:151958097-151958098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151951220..151953763-chr2:151956796..151959485,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10176186	0.97[ASN][1000 genomes]
rs10187168	0.97[ASN][1000 genomes]
rs10187570	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10188675	0.97[ASN][1000 genomes]
rs10198544	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10205429	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1074149	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11890910	0.97[ASN][1000 genomes]
rs12465694	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12992820	0.97[ASN][1000 genomes]
rs13414651	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1485099	0.98[ASN][1000 genomes]
rs1601359	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17197926	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17197940	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1843269	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2062363	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2062364	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342552	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4374368	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56317281	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62169063	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62169068	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720066	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs749691	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs936766	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151942400-151958800	Weak transcription	Fetal Brain Female	brain
2	chr2:151953600-151958800	Weak transcription	Fetal Brain Male	brain
3	chr2:151954200-151958800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:151954200-151959400	Weak transcription	Fetal Stomach	stomach
5	chr2:151954400-151958600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:151954400-151958800	Weak transcription	Brain Germinal Matrix	brain
7	chr2:151955800-151959200	Weak transcription	Fetal Lung	lung

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