Variant report

Variant	rs1485099
Chromosome Location	chr2:151960452-151960453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10174574	0.82[AMR][1000 genomes]
rs10176186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10187168	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10188675	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10193451	0.84[AMR][1000 genomes]
rs10205429	0.97[ASN][1000 genomes]
rs1074149	0.92[ASN][1000 genomes]
rs10930435	0.83[AMR][1000 genomes]
rs1115140	0.82[AMR][1000 genomes]
rs11883593	0.82[AMR][1000 genomes]
rs11883594	0.82[AMR][1000 genomes]
rs11889216	0.84[AMR][1000 genomes]
rs11890910	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12992820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1351930	0.82[AMR][1000 genomes]
rs1485097	0.82[AMR][1000 genomes]
rs1485112	0.82[AMR][1000 genomes]
rs1485113	0.82[AMR][1000 genomes]
rs1485117	0.84[AMR][1000 genomes]
rs1601359	0.98[ASN][1000 genomes]
rs17197940	0.97[ASN][1000 genomes]
rs1843269	0.97[ASN][1000 genomes]
rs1843271	0.84[AMR][1000 genomes]
rs1905742	0.98[ASN][1000 genomes]
rs2062364	0.98[ASN][1000 genomes]
rs2086914	0.82[AMR][1000 genomes]
rs3940993	0.82[AMR][1000 genomes]
rs4374368	0.98[ASN][1000 genomes]
rs4606923	0.82[AMR][1000 genomes]
rs4664951	0.82[AMR][1000 genomes]
rs4664952	0.82[AMR][1000 genomes]
rs56317281	0.97[ASN][1000 genomes]
rs62169068	0.98[ASN][1000 genomes]
rs749691	0.97[ASN][1000 genomes]
rs936766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151959600-151963000	Weak transcription	NHDF-Ad	bronchial
2	chr2:151959800-151963000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:151960200-151961000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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