Variant report
| Variant | rs12466188 |
|---|---|
| Chromosome Location | chr2:142694455-142694456 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142691573..142694567-chr2:142695024..142697127,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10496907 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes] |
| rs12467378 | 0.90[CEU][hapmap];0.92[JPT][hapmap] |
| rs13011272 | 0.81[CHB][hapmap];0.82[JPT][hapmap] |
| rs16847729 | 0.81[JPT][hapmap];1.00[YRI][hapmap] |
| rs16847733 | 0.80[JPT][hapmap] |
| rs2381167 | 0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs72850843 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs956958 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv583238 | chr2:142646363-142739121 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv875251 | chr2:142656200-142701852 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv875252 | chr2:142666003-142768518 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv1004207 | chr2:142684812-142741653 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv2762863 | chr2:142684812-142771707 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
