Variant report

Variant	rs16847729
Chromosome Location	chr2:142716216-142716217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10496907	0.81[JPT][hapmap]
rs12466188	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs16847733	0.94[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs2381167	0.81[JPT][hapmap]
rs72852549	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs956958	0.82[ASW][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1004207	chr2:142684812-142741653	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142714600-142717200	Enhancers	Brain Substantia Nigra	brain
2	chr2:142715000-142718000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:142715200-142718400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:142715800-142716400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:142715800-142716400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:142716000-142716800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:142716000-142716800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:142716000-142717400	Enhancers	Brain Hippocampus Middle	brain
9	chr2:142716200-142716600	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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