Variant report
| Variant | rs12466911 |
|---|---|
| Chromosome Location | chr2:21937461-21937462 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12464757 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13390535 | 1.00[ASN][1000 genomes] |
| rs13403394 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13408439 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13415187 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13415274 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13430310 | 1.00[ASN][1000 genomes] |
| rs1901343 | 1.00[AFR][1000 genomes] |
| rs1901345 | 1.00[AFR][1000 genomes] |
| rs1901347 | 1.00[AFR][1000 genomes] |
| rs2218882 | 0.91[AFR][1000 genomes] |
| rs4082173 | 1.00[AFR][1000 genomes] |
| rs72897882 | 0.91[AFR][1000 genomes] |
| rs72897891 | 1.00[AFR][1000 genomes] |
| rs72897892 | 1.00[AFR][1000 genomes] |
| rs72897894 | 1.00[AFR][1000 genomes] |
| rs72897896 | 1.00[AFR][1000 genomes] |
| rs72897899 | 1.00[AFR][1000 genomes] |
| rs72897902 | 1.00[AFR][1000 genomes] |
| rs72899867 | 1.00[AFR][1000 genomes] |
| rs72899871 | 1.00[AFR][1000 genomes] |
| rs72899873 | 1.00[AFR][1000 genomes] |
| rs72899875 | 0.92[AFR][1000 genomes] |
| rs72899878 | 1.00[AFR][1000 genomes] |
| rs72899881 | 1.00[AFR][1000 genomes] |
| rs72899885 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011486 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv535602 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | esv3406784 | chr2:21805088-22160765 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv581171 | chr2:21897192-21952204 | Enhancers Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv430602 | chr2:21910981-22221206 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21935000-21938000 | Weak transcription | Fetal Heart | heart |
