Variant report

Variant	rs72899878
Chromosome Location	chr2:21939032-21939033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12464757	1.00[AFR][1000 genomes]
rs12466911	1.00[AFR][1000 genomes]
rs1901343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1901345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1901347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2218882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4082172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4082173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57119946	0.83[AMR][1000 genomes]
rs57994839	0.83[AMR][1000 genomes]
rs59102304	1.00[EUR][1000 genomes]
rs59464527	0.83[AMR][1000 genomes]
rs60445840	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899875	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899885	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899889	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899891	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899893	1.00[EUR][1000 genomes]
rs72899896	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899901	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901713	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901720	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901721	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901727	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901729	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901731	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901736	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901741	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901767	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901774	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909015	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909023	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv581171	chr2:21897192-21952204	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv430602	chr2:21910981-22221206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21938000-21939400	Enhancers	Fetal Heart	heart
2	chr2:21938200-21939800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:21938400-21939600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:21938400-21939800	Enhancers	Fetal Stomach	stomach
5	chr2:21938800-21939800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:21938800-21939800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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