Variant report

Variant	rs59102304
Chromosome Location	chr2:21995764-21995765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1901343	1.00[EUR][1000 genomes]
rs1901345	1.00[EUR][1000 genomes]
rs1901347	1.00[EUR][1000 genomes]
rs2218882	0.93[EUR][1000 genomes]
rs4082172	1.00[EUR][1000 genomes]
rs4082173	1.00[EUR][1000 genomes]
rs60445840	1.00[EUR][1000 genomes]
rs72897882	1.00[EUR][1000 genomes]
rs72897891	1.00[EUR][1000 genomes]
rs72897892	1.00[EUR][1000 genomes]
rs72897894	1.00[EUR][1000 genomes]
rs72897896	1.00[EUR][1000 genomes]
rs72897899	1.00[EUR][1000 genomes]
rs72897902	1.00[EUR][1000 genomes]
rs72899865	1.00[EUR][1000 genomes]
rs72899867	1.00[EUR][1000 genomes]
rs72899871	1.00[EUR][1000 genomes]
rs72899873	1.00[EUR][1000 genomes]
rs72899875	1.00[EUR][1000 genomes]
rs72899877	1.00[EUR][1000 genomes]
rs72899878	1.00[EUR][1000 genomes]
rs72899881	1.00[EUR][1000 genomes]
rs72899883	1.00[EUR][1000 genomes]
rs72899885	1.00[EUR][1000 genomes]
rs72899889	1.00[EUR][1000 genomes]
rs72899891	1.00[EUR][1000 genomes]
rs72899893	1.00[EUR][1000 genomes]
rs72899896	1.00[EUR][1000 genomes]
rs72899898	1.00[EUR][1000 genomes]
rs72899901	1.00[EUR][1000 genomes]
rs72901713	1.00[EUR][1000 genomes]
rs72901720	1.00[EUR][1000 genomes]
rs72901721	1.00[EUR][1000 genomes]
rs72901727	1.00[EUR][1000 genomes]
rs72901729	1.00[EUR][1000 genomes]
rs72901731	1.00[EUR][1000 genomes]
rs72901736	1.00[EUR][1000 genomes]
rs72901741	1.00[EUR][1000 genomes]
rs72901767	1.00[EUR][1000 genomes]
rs72901774	1.00[EUR][1000 genomes]
rs72909015	1.00[EUR][1000 genomes]
rs72909023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv430602	chr2:21910981-22221206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59102304	DYNC1H1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21993200-21998000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:21993800-21996000	Enhancers	NHLF	lung
3	chr2:21994400-21996400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:21994400-21997600	Weak transcription	Ovary	ovary
5	chr2:21994600-21998200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:21994600-22016400	Weak transcription	Aorta	Aorta
7	chr2:21995000-21996400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:21995000-21996800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:21995000-21998200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:21995000-21998200	Enhancers	HUVEC	blood vessel
11	chr2:21995400-21997400	Enhancers	Fetal Heart	heart
12	chr2:21995600-21996000	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links