The 2.0 version of rSNPBase

Variant report

Variant rs12467598
Chromosome Location chr2:10053412-10053413
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:9993800-10079600 Weak transcription Gastric stomach
2 chr2:9999200-10053800 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr2:10017800-10073000 Weak transcription Right Ventricle heart
4 chr2:10024400-10053800 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr2:10025000-10053800 Weak transcription Fetal Muscle Trunk muscle
6 chr2:10025000-10053800 Weak transcription Ovary ovary
7 chr2:10025000-10054400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr2:10025000-10054400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr2:10025000-10054400 Weak transcription Spleen Spleen
10 chr2:10026000-10072800 Weak transcription Stomach Smooth Muscle stomach
11 chr2:10028200-10053800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr2:10030400-10077200 Weak transcription Aorta Aorta
13 chr2:10030600-10080600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr2:10036000-10065800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
15 chr2:10036600-10076200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr2:10036800-10073000 Weak transcription H1 Cell Line embryonic stem cell
17 chr2:10037200-10080400 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr2:10037800-10075600 Weak transcription Brain Cingulate Gyrus brain
19 chr2:10038000-10053600 Weak transcription Fetal Lung lung
20 chr2:10038000-10053800 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr2:10038400-10053800 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr2:10038400-10053800 Weak transcription GM12878-XiMat blood
23 chr2:10038400-10054400 Weak transcription NHLF lung
24 chr2:10038400-10054600 Weak transcription Fetal Brain Female brain
25 chr2:10038600-10054400 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr2:10038600-10054400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr2:10038600-10054400 Weak transcription Small Intestine intestine
28 chr2:10038600-10054400 Weak transcription Hela-S3 cervix
29 chr2:10038600-10079800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr2:10038600-10081400 Weak transcription iPS-15b Cell Line embryonic stem cell
31 chr2:10038800-10053600 Weak transcription A549 lung
32 chr2:10038800-10054400 Weak transcription NHEK skin
33 chr2:10039000-10058600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr2:10039400-10059400 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr2:10042600-10077000 Weak transcription Colon Smooth Muscle Colon
36 chr2:10044200-10065200 Strong transcription Monocytes-CD14+_RO01746 blood
37 chr2:10045000-10056600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
38 chr2:10045000-10058400 Weak transcription Psoas Muscle Psoas
39 chr2:10045600-10054400 Weak transcription Placenta Amnion Placenta Amnion
40 chr2:10045800-10079600 Weak transcription Esophagus oesophagus
41 chr2:10046000-10075200 Weak transcription Brain Hippocampus Middle brain
42 chr2:10047200-10056800 Strong transcription Primary T regulatory cells fromperipheralblood blood
43 chr2:10047200-10061600 Strong transcription Primary T cells fromperipheralblood blood
44 chr2:10047200-10080000 Weak transcription Colonic Mucosa Colon
45 chr2:10047800-10054400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr2:10047800-10054400 Weak transcription Fetal Stomach stomach
47 chr2:10048000-10053800 Weak transcription Fetal Intestine Large intestine
48 chr2:10048200-10053800 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr2:10048200-10053800 Weak transcription Thymus Thymus
50 chr2:10048600-10058400 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015