Variant report

Variant	rs12467767
Chromosome Location	chr2:21514481-21514482
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10185261	0.84[EUR][1000 genomes]
rs10185535	0.84[EUR][1000 genomes]
rs10192339	0.84[EUR][1000 genomes]
rs10196906	0.84[EUR][1000 genomes]
rs10199484	0.84[EUR][1000 genomes]
rs10199765	0.84[EUR][1000 genomes]
rs21730	0.83[EUR][1000 genomes]
rs219505	0.83[EUR][1000 genomes]
rs219506	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs219507	0.83[EUR][1000 genomes]
rs219508	0.83[EUR][1000 genomes]
rs219509	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs219510	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs219531	0.82[EUR][1000 genomes]
rs219532	0.82[EUR][1000 genomes]
rs219533	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs219534	0.82[EUR][1000 genomes]
rs219535	0.82[EUR][1000 genomes]
rs219536	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs219537	0.83[EUR][1000 genomes]
rs219538	0.83[EUR][1000 genomes]
rs219539	0.81[EUR][1000 genomes]
rs219540	0.83[EUR][1000 genomes]
rs219541	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs219546	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2217745	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs380969	0.83[EUR][1000 genomes]
rs389795	0.83[EUR][1000 genomes]
rs390062	0.83[EUR][1000 genomes]
rs391070	0.82[EUR][1000 genomes]
rs399991	0.82[EUR][1000 genomes]
rs401843	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs412558	0.82[EUR][1000 genomes]
rs418451	0.83[EUR][1000 genomes]
rs423277	0.82[EUR][1000 genomes]
rs425440	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs439907	0.83[EUR][1000 genomes]
rs55815563	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55841071	0.83[EUR][1000 genomes]
rs56286635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59020225	0.83[EUR][1000 genomes]
rs59920883	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61603728	0.84[EUR][1000 genomes]
rs6704721	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6708193	0.83[ASN][1000 genomes]
rs72789650	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72789652	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72789656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7369047	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21510600-21514600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:21510600-21514600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:21511400-21527400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:21513000-21514600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:21513000-21517400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:21513000-21538200	Weak transcription	Aorta	Aorta
7	chr2:21513200-21515400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:21513400-21514600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:21513400-21517000	Weak transcription	Ovary	ovary
10	chr2:21513600-21518200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:21514000-21515000	Enhancers	Brain Substantia Nigra	brain
12	chr2:21514200-21514600	Enhancers	Brain Hippocampus Middle	brain
13	chr2:21514400-21514800	Enhancers	Brain Angular Gyrus	brain

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