Variant report

Variant	rs219546
Chromosome Location	chr2:21537497-21537498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10185261	0.82[EUR][1000 genomes]
rs10185535	0.82[EUR][1000 genomes]
rs10192339	0.81[EUR][1000 genomes]
rs10196906	0.81[EUR][1000 genomes]
rs10199484	0.82[EUR][1000 genomes]
rs10199765	0.81[EUR][1000 genomes]
rs12467767	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs21730	0.82[EUR][1000 genomes]
rs219505	0.82[EUR][1000 genomes]
rs219506	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs219507	0.82[EUR][1000 genomes]
rs219508	0.82[EUR][1000 genomes]
rs219509	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs219510	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs219531	0.83[EUR][1000 genomes]
rs219532	0.83[EUR][1000 genomes]
rs219533	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs219534	0.83[EUR][1000 genomes]
rs219535	0.83[EUR][1000 genomes]
rs219536	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs219537	0.82[EUR][1000 genomes]
rs219538	0.82[EUR][1000 genomes]
rs219539	0.81[EUR][1000 genomes]
rs219540	0.82[EUR][1000 genomes]
rs219541	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2217745	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs380969	0.82[EUR][1000 genomes]
rs389795	0.82[EUR][1000 genomes]
rs390062	0.82[EUR][1000 genomes]
rs391070	0.81[EUR][1000 genomes]
rs399991	0.82[EUR][1000 genomes]
rs401843	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs412558	0.83[EUR][1000 genomes]
rs418451	0.82[EUR][1000 genomes]
rs423277	0.83[EUR][1000 genomes]
rs425440	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs439907	0.82[EUR][1000 genomes]
rs4665702	0.80[EUR][1000 genomes]
rs55815563	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55841071	0.82[EUR][1000 genomes]
rs56286635	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59020225	0.82[EUR][1000 genomes]
rs59920883	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61603728	0.81[EUR][1000 genomes]
rs6704721	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72789650	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72789652	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72789656	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7369047	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1003630	chr2:21521637-21546859	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21513000-21538200	Weak transcription	Aorta	Aorta
2	chr2:21536400-21538800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:21537000-21537800	Enhancers	Brain Substantia Nigra	brain
4	chr2:21537000-21539200	Enhancers	Brain Hippocampus Middle	brain
5	chr2:21537000-21540200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr2:21537400-21539600	Weak transcription	Brain Anterior Caudate	brain
7	chr2:21537400-21539600	Weak transcription	Brain Cingulate Gyrus	brain

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