Variant report

Variant	rs4665702
Chromosome Location	chr2:21538345-21538346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs219546	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1003630	chr2:21521637-21546859	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4665702	RHOB	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21536400-21538800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:21537000-21539200	Enhancers	Brain Hippocampus Middle	brain
3	chr2:21537000-21540200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr2:21537400-21539600	Weak transcription	Brain Anterior Caudate	brain
5	chr2:21537400-21539600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:21537600-21539000	Enhancers	Colon Smooth Muscle	Colon
7	chr2:21537800-21539400	Weak transcription	Brain Substantia Nigra	brain
8	chr2:21538000-21538400	Enhancers	Ovary	ovary
9	chr2:21538000-21538400	Enhancers	Pancreas	Pancrea
10	chr2:21538000-21538400	Enhancers	Rectal Smooth Muscle	rectum
11	chr2:21538000-21538400	Enhancers	Right Atrium	heart
12	chr2:21538000-21538600	Enhancers	Spleen	Spleen
13	chr2:21538200-21540200	Enhancers	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links