Variant report
| Variant | rs12472624 |
|---|---|
| Chromosome Location | chr2:125428323-125428324 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11123058 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs11686120 | 0.83[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11900585 | 0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs12467127 | 0.84[CEU][hapmap];1.00[JPT][hapmap] |
| rs1454135 | 0.87[CEU][hapmap];1.00[JPT][hapmap] |
| rs1454136 | 0.87[CEU][hapmap];1.00[JPT][hapmap] |
| rs17320899 | 1.00[JPT][hapmap] |
| rs2421094 | 0.87[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2901333 | 0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs34836625 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4848970 | 0.87[CEU][hapmap];1.00[JPT][hapmap] |
| rs55858918 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs55960516 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7600422 | 0.87[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs768318 | 1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs768319 | 1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834359 | chr2:125367872-125536022 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv428727 | chr2:125372897-125512949 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2152580 | chr2:125428007-125428441 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
