Variant report

Variant	rs2421094
Chromosome Location	chr2:125437242-125437243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11123058	0.95[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11686120	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900585	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12467127	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs12472624	0.87[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1454135	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1454136	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17320899	1.00[JPT][hapmap]
rs2901333	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs34836625	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4848970	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs55858918	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960516	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600422	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768318	0.84[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs768319	0.84[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125436800-125439800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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