Variant report

Variant	rs12472655
Chromosome Location	chr2:206219013-206219014
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10490290	0.83[EUR][1000 genomes]
rs10490292	0.83[EUR][1000 genomes]
rs10490293	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10804147	0.84[EUR][1000 genomes]
rs10804148	0.83[EUR][1000 genomes]
rs10932104	0.84[EUR][1000 genomes]
rs10932105	0.85[EUR][1000 genomes]
rs10932106	0.85[EUR][1000 genomes]
rs10932107	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10932108	0.86[EUR][1000 genomes]
rs10932109	0.83[EUR][1000 genomes]
rs11676344	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11676518	0.83[EUR][1000 genomes]
rs11676519	0.83[EUR][1000 genomes]
rs11676529	0.83[EUR][1000 genomes]
rs11677457	0.84[EUR][1000 genomes]
rs11686270	0.83[EUR][1000 genomes]
rs11690480	0.84[EUR][1000 genomes]
rs11690561	0.84[EUR][1000 genomes]
rs11691342	0.83[EUR][1000 genomes]
rs11691345	0.84[EUR][1000 genomes]
rs11695465	0.83[EUR][1000 genomes]
rs12373584	0.83[EUR][1000 genomes]
rs12373610	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12464688	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12468975	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12470003	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12470079	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12470434	0.83[EUR][1000 genomes]
rs12472752	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12472815	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12476682	0.84[EUR][1000 genomes]
rs12623757	0.84[EUR][1000 genomes]
rs12989507	0.84[EUR][1000 genomes]
rs12995657	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13000324	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13009974	0.84[EUR][1000 genomes]
rs13021602	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13024741	0.83[EUR][1000 genomes]
rs13025702	0.89[ASN][1000 genomes]
rs13028215	0.81[EUR][1000 genomes]
rs13033820	0.83[EUR][1000 genomes]
rs1398053	0.83[EUR][1000 genomes]
rs1398054	0.83[EUR][1000 genomes]
rs1511873	0.83[EUR][1000 genomes]
rs1511874	0.84[EUR][1000 genomes]
rs1606238	0.84[EUR][1000 genomes]
rs1606239	0.84[EUR][1000 genomes]
rs17201041	0.84[EUR][1000 genomes]
rs1849226	0.83[EUR][1000 genomes]
rs1861514	0.84[EUR][1000 genomes]
rs1877338	0.83[EUR][1000 genomes]
rs1877339	0.83[EUR][1000 genomes]
rs1912845	0.84[EUR][1000 genomes]
rs2041877	0.85[EUR][1000 genomes]
rs2080416	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2080418	0.84[EUR][1000 genomes]
rs2160455	0.83[EUR][1000 genomes]
rs2336420	0.86[EUR][1000 genomes]
rs2541159	0.80[ASN][1000 genomes]
rs34332011	0.83[EUR][1000 genomes]
rs34486316	0.86[EUR][1000 genomes]
rs35337631	0.86[EUR][1000 genomes]
rs3843339	0.83[EUR][1000 genomes]
rs4119079	0.81[EUR][1000 genomes]
rs4119081	0.81[EUR][1000 genomes]
rs4505506	0.84[EUR][1000 genomes]
rs4595957	0.83[EUR][1000 genomes]
rs4673319	0.84[EUR][1000 genomes]
rs4673320	0.82[EUR][1000 genomes]
rs4673324	0.85[EUR][1000 genomes]
rs4673325	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4673326	0.83[EUR][1000 genomes]
rs4673327	0.83[EUR][1000 genomes]
rs4673328	0.83[EUR][1000 genomes]
rs4673329	0.83[EUR][1000 genomes]
rs4673330	0.83[EUR][1000 genomes]
rs4675519	0.84[EUR][1000 genomes]
rs62171506	0.84[EUR][1000 genomes]
rs6740963	0.86[EUR][1000 genomes]
rs6755865	0.86[EUR][1000 genomes]
rs6756234	0.84[EUR][1000 genomes]
rs6761373	0.83[EUR][1000 genomes]
rs7582340	0.84[EUR][1000 genomes]
rs964896	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs964897	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs979187	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
2	chr2:206213000-206222600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:206213000-206223200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:206213200-206222600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:206218000-206222600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:206218000-206223000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:206218000-206223000	Weak transcription	NH-A	brain
8	chr2:206218000-206223400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:206218200-206221800	Weak transcription	NHEK	skin
10	chr2:206218200-206222400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:206218200-206222600	Weak transcription	HMEC	breast
12	chr2:206218200-206222800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:206218200-206223000	Weak transcription	Osteobl	bone
14	chr2:206218200-206223200	Weak transcription	HSMM	muscle
15	chr2:206218200-206223400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:206218200-206225600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:206218600-206222600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:206218600-206222600	Weak transcription	NHDF-Ad	bronchial

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