Variant report

Variant	rs13025702
Chromosome Location	chr2:206204079-206204080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12468755	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12468794	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12472655	0.89[ASN][1000 genomes]
rs13011880	0.81[AFR][1000 genomes]
rs13011981	0.81[EUR][1000 genomes]
rs2080416	0.93[ASN][1000 genomes]
rs2080419	0.81[AFR][1000 genomes]
rs3845806	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs3928642	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4675510	0.80[EUR][1000 genomes]
rs4675515	0.85[AFR][1000 genomes]
rs6758445	0.81[EUR][1000 genomes]
rs849190	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206186800-206217400	Weak transcription	HSMM	muscle
2	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
3	chr2:206200400-206211400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:206202400-206207800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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