Variant report

Variant	rs12473154
Chromosome Location	chr2:124844287-124844288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1017462	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs11123018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11123021	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs11679532	0.81[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11679636	0.87[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11693515	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs11896523	0.94[JPT][hapmap]
rs11896878	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs12465377	0.90[ASN][1000 genomes]
rs12473184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12475898	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13032868	0.81[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs1347873	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs1347874	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1347875	0.90[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1439134	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs1439135	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1439138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1583715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17271252	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17271568	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1866479	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1898787	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs2043886	0.93[JPT][hapmap]
rs2420439	0.95[ASN][1000 genomes]
rs2420441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2901197	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs3902861	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4340523	0.93[JPT][hapmap]
rs4362567	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4452145	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs4456715	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs4473382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4588195	0.95[ASN][1000 genomes]
rs6730550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6746702	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7566987	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs951032	0.90[ASN][1000 genomes]
rs980374	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs991481	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2514577	chr2:124843213-124846208	Enhancers	n/a	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links