Variant report

Variant	rs13032868
Chromosome Location	chr2:124849293-124849294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1017462	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1036607	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11123018	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs11123021	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap]
rs11679532	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679636	0.82[ASW][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.83[MEX][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11693515	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11896523	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11896568	1.00[CHB][hapmap]
rs11896878	0.91[CHB][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap]
rs12465377	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12467198	0.82[AFR][1000 genomes]
rs12473154	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs12473184	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs12475898	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs1347873	0.91[CHB][hapmap]
rs1347874	0.91[CHB][hapmap]
rs1347875	0.91[CHB][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.92[TSI][hapmap]
rs1439134	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1439135	0.91[ASW][hapmap];0.91[CHB][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1439138	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs1583715	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs17271252	0.82[CHB][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.94[TSI][hapmap]
rs17271568	0.82[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap]
rs1866479	0.91[ASW][hapmap];0.91[CHB][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1898787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2043886	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2420439	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2420441	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs2901197	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap]
rs3902861	0.91[CHB][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs4340523	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4362567	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4452145	0.91[CHB][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap]
rs4456715	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.95[MKK][hapmap];0.92[YRI][hapmap]
rs4473382	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs4588195	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6730550	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs6746702	0.84[CHB][hapmap]
rs7566987	0.91[ASW][hapmap];0.91[CHB][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.97[TSI][hapmap]
rs980374	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs991481	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13032868	LOC84931	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124847400-124849400	Weak transcription	Fetal Intestine Large	intestine
2	chr2:124848800-124850000	Enhancers	Duodenum Mucosa	Duodenum
3	chr2:124849200-124849400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:124849200-124850000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:124849200-124851000	Enhancers	Fetal Intestine Small	intestine

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