Variant report

Variant	rs11896568
Chromosome Location	chr2:124887209-124887210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1017462	1.00[CHB][hapmap]
rs1036607	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11123021	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11679532	1.00[CHB][hapmap]
rs11679636	0.90[CHB][hapmap]
rs11693515	1.00[CHB][hapmap]
rs11896523	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11896878	0.89[CHB][hapmap]
rs12467198	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12475898	0.89[CHB][hapmap]
rs13032868	1.00[CHB][hapmap]
rs1347873	0.89[CHB][hapmap]
rs1347874	0.89[CHB][hapmap]
rs1347875	0.89[CHB][hapmap]
rs1439134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1439135	0.89[CHB][hapmap]
rs1529289	0.81[CEU][hapmap]
rs17271252	0.89[CHB][hapmap]
rs17271568	0.89[CHB][hapmap]
rs1866479	0.89[CHB][hapmap]
rs1898787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1919839	0.85[CEU][hapmap]
rs2043885	0.83[CEU][hapmap]
rs2043886	0.95[CEU][hapmap];0.89[CHB][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2420559	0.85[CEU][hapmap]
rs2699365	0.81[CEU][hapmap]
rs2901197	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3902861	0.89[CHB][hapmap]
rs4340523	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4362567	1.00[CHB][hapmap]
rs4452145	0.89[CHB][hapmap]
rs4456715	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6746702	0.84[CHB][hapmap]
rs7566987	0.89[CHB][hapmap]
rs7592198	0.82[CEU][hapmap]
rs980374	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124887000-124887400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr2:124887000-124887600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:124887000-124887600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:124887000-124887800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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